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accession-icon GSE1938
Phosphomannose isomerase gene (PMI40) deletion strain cultivated in varying initial mannose concentrations
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 15 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome S98 Array (ygs98)

Description

YEAST STRAIN:

Publication Title

Excess mannose limits the growth of phosphomannose isomerase PMI40 deletion strain of Saccharomyces cerevisiae.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE57542
Expression data measured by Nanostring and microarray of monocyte-derived dendritic cells from healthy individuals stimulated with LPS, influenza, or IFN-beta, or left unstimulated
  • organism-icon Homo sapiens
  • sample-icon 228 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Common genetic variants modulate pathogen-sensing responses in human dendritic cells.

Sample Metadata Fields

Sex, Age, Race, Subject

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accession-icon GSE36139
SNP and Expression data from the Cancer Cell Line Encyclopedia (CCLE)
  • organism-icon Homo sapiens
  • sample-icon 882 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE36133
Expression data from the Cancer Cell Line Encyclopedia (CCLE)
  • organism-icon Homo sapiens
  • sample-icon 882 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

The Cancer Cell Line Encyclopedia (CCLE) project is a collaboration between the Broad Institute, the Novartis Institutes for Biomedical Research and the Genomics Novartis Foundation to conduct a detailed genetic and pharmacologic characterization of a large panel of human cancer models

Publication Title

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE17312
BI Human Reference Epigenome Mapping Project
  • organism-icon Homo sapiens
  • sample-icon 16 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

The NIH Roadmap Epigenomics Mapping Consortium aims to produce a public resource of epigenomic maps for stem cells and primary ex vivo tissues selected to represent the normal counterparts of tissues and organ systems frequently involved in human disease.

Publication Title

The NIH Roadmap Epigenomics Mapping Consortium.

Sample Metadata Fields

Sex, Specimen part, Disease, Subject

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accession-icon GSE5258
Connectivity Map dataset (build01)
  • organism-icon Homo sapiens
  • sample-icon 346 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A Array (hgu133a)

Description

A reference collection of genome-wide transcriptional expression data for bioactive small molecules.

Publication Title

The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE26863
MMRC expression and aCGH reference collection
  • organism-icon Homo sapiens
  • sample-icon 299 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Initial genome sequencing and analysis of multiple myeloma.

Sample Metadata Fields

Specimen part, Disease, Disease stage

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accession-icon GSE26760
MMRC expression reference collection
  • organism-icon Homo sapiens
  • sample-icon 299 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

The MMRC reference collection is a dataset of gene expression profiling, array comparative genomic hybridization, and re-sequencing created as a resource for the Multiple Myeloma research community.

Publication Title

Initial genome sequencing and analysis of multiple myeloma.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE69986
Expression profiling of invasive breast carcinoma samples from Institut Curie
  • organism-icon Homo sapiens
  • sample-icon 255 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Genomic hallmarks of homologous recombination deficiency in invasive breast carcinomas to appear in Internationa Journal of Cancer

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE21545
Biobank of Karolinska Endarterectomy (BiKE)
  • organism-icon Homo sapiens
  • sample-icon 223 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

A biobank collection of carotid plaque samples taken from patients undergoing endarterectomy operations.

Publication Title

Prediction of ischemic events on the basis of transcriptomic and genomic profiling in patients undergoing carotid endarterectomy.

Sample Metadata Fields

Specimen part, Disease, Subject

View Samples
...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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