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accession-icon GSE76671
Pre- and Post-hatch transcriptomic response of chicken Musculus pectoralis major to transient variation of incubation temperature
  • organism-icon Gallus gallus
  • sample-icon 87 Downloadable Samples
  • Technology Badge Icon Affymetrix Chicken Gene 1.0 ST Array (chigene10st)

Description

After elevated and reduced incubation temperature during embryonic days (ED) 7-10 and 10-13 changes of gene expression were determined at ED 10, ED 13, and post-hatch at day (D) 35

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE76670
Pre- and Post-hatch transcriptomic response of chicken Musculus gastrocnemius to transient variation of incubation temperature
  • organism-icon Gallus gallus
  • sample-icon 88 Downloadable Samples
  • Technology Badge Icon Affymetrix Chicken Gene 1.0 ST Array (chigene10st)

Description

After elevated and reduced incubation temperature during embryonic days (ED) 7-10 and 10-13 changes of gene expression were determined at ED 10, ED 13, and post-hatch at day (D) 35

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE64246
Investigating pathogen defense mechanisms of porcine mammary epithelial cells in vitro.
  • organism-icon Sus scrofa
  • sample-icon 43 Downloadable Samples
  • Technology Badge Icon Affymetrix Porcine Genome Array (porcine)

Description

Porcine mammary epithelial cell (PMEC) cultures of three lactating sows were treated with potential mastitis-causing pathogens E. coli and S. aureus in vitro. Subsequently transcriptome profiles were analysed after 3 h and 24 h post-challenge, respectively.

Publication Title

No associated publication

Sample Metadata Fields

Treatment, Time

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accession-icon GSE95568
Possible molecular mechanisms by which an essential oil blend from star anise, rosemary, thyme, and oregano and saponins increase the performance and ileal protein digestibility of growing broilers
  • organism-icon Gallus gallus
  • sample-icon 32 Downloadable Samples
  • Technology Badge Icon Affymetrix Chicken Gene 1.0 ST Array (chigene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Time

View Samples
accession-icon GSE59299
Fetal programming of liver transcriptome in response to gestational diets varying in methylating micronutrients in pigs
  • organism-icon Sus scrofa
  • sample-icon 31 Downloadable Samples
  • Technology Badge Icon Affymetrix Porcine Genome Array (porcine)

Description

Pietrain gilts were fed a control diet (CON) or a methyl-enriched diet (MET) throughout their pregnancy. Liver transcriptome profiles of the offspring were analyzed at prenatal stages [35, 63, 91 days post-conception (dpc)].

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE11113
Expression profiling of a high-fertility mouse line by microarray analysis and qPCR.
  • organism-icon Mus musculus
  • sample-icon 24 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Expression 430A Array (moe430a)

Description

The objective of the present study was to identify genes that are involved in increasing the ovulation number in mouse line FL1 that had been selected for high fertility performance.

Publication Title

Expression profiling of a high-fertility mouse line by microarray analysis and qPCR.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE111184
Transcriptional effects of Deoxynivalenol on intestinal porcine epithelial cells (IPEC-J2)
  • organism-icon Sus scrofa
  • sample-icon 23 Downloadable Samples
  • Technology Badge Icon Affymetrix Porcine Genome Array (porcine)

Description

in vitro microarray study of transcriptional changes of jejunal cells

Publication Title

Deoxynivalenol Affects Cell Metabolism and Increases Protein Biosynthesis in Intestinal Porcine Epithelial Cells (IPEC-J2): DON Increases Protein Biosynthesis.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE75347
Comparative analysis of Musculus longissimus dorsi expression of Holstein x Charolais F2 cattle (SEGFAM) with high and low intramuscular fat (IMF) content
  • organism-icon Bos taurus
  • sample-icon 20 Downloadable Samples
  • Technology Badge Icon Affymetrix Bovine Genome Array (bovine)

Description

10 + 10 Holstein x Charolais F2 cattle were assigned to 2 groups with high and low IMF content, respectively; Musculus longissimus dorsi mRNA expression was determined by microarray analysis

Publication Title

Gene expression profile of Musculus longissimus dorsi in bulls of a Charolais × Holstein F2-cross with divergent intramuscular fat content.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE56162
Differential effects of maternal high protein diets on liver transcriptomes
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

The objective of this study was to test if maternal high protein diet during pregnancy or lactation, imposes different transient or persistently imprinted effects on the liver transcriptome of offspring

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE107114
Gene expression of bursa fabricius of Thai indigenous chicken breeds
  • organism-icon Gallus gallus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Chicken Gene 1.0 ST Array (chigene10st)

Description

Analysis of gene expression of Bursa of Fabricius samples of 3 male chickens of 6 breeds revealed differential expression of genes related to Ingenuity pathways immune cell trafficking, cell-mediated immune response, humoral immune response and infectious disease.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part

View Samples
...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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