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accession-icon GSE75574
Gene expression in mouse tissues in response to short-term calorie restriction
  • organism-icon Mus musculus
  • sample-icon 448 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Identification of tissue-specific transcriptional markers of caloric restriction in the mouse and their use to evaluate caloric restriction mimetics.

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE75572
Gene expression in mouse heart in response to short-term calorie restriction
  • organism-icon Mus musculus
  • sample-icon 112 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

The effect of a short-term calorie restricted diet was evaluated in heart in seven strains of mice

Publication Title

Identification of tissue-specific transcriptional markers of caloric restriction in the mouse and their use to evaluate caloric restriction mimetics.

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE75571
Gene expression in mouse gastrocnemius muscle in response to short-term calorie restriction
  • organism-icon Mus musculus
  • sample-icon 112 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

The effect of a short-term calorie restricted diet was evaluated in gastrocnemius muscle (GASTROC) in seven strains of mice

Publication Title

Identification of tissue-specific transcriptional markers of caloric restriction in the mouse and their use to evaluate caloric restriction mimetics.

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE75573
Gene expression in mouse epididymal white adipose tissue in response to short-term calorie restriction
  • organism-icon Mus musculus
  • sample-icon 112 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

The effect of a short-term calorie restricted diet was evaluated in epididymal white adipose tissue (WAT) in seven strains of mice

Publication Title

Identification of tissue-specific transcriptional markers of caloric restriction in the mouse and their use to evaluate caloric restriction mimetics.

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE75569
Gene expression in mouse cerebral cortex in response to short-term calorie restriction
  • organism-icon Mus musculus
  • sample-icon 112 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

The effect of a short-term calorie restricted diet was evaluated in cerebral cortex in seven strains of mice

Publication Title

Identification of tissue-specific transcriptional markers of caloric restriction in the mouse and their use to evaluate caloric restriction mimetics.

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE50789
Gene expression in mouse liver in response to short-term calorie restriction
  • organism-icon Mus musculus
  • sample-icon 96 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

The effect of a short-term calorie restricted diet was evaluated in six strains of mice

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE11291
Effect of age, calorie restriction and resveratrol on gene expression in mouse heart, brain, and skeletal muscle
  • organism-icon Mus musculus
  • sample-icon 60 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Resveratrol in high doses has been shown to extend lifespan in some studies in invertebrates and to prevent early mortality in mice fed a high-fat diet. We fed mice from middle age (14-months) to old age (30-months) either a control diet, a low dose of resveratrol (4.9 mg kg-1 day-1), or a calorie restricted (CR) diet and examined genome-wide transcriptional profiles.

Publication Title

A low dose of dietary resveratrol partially mimics caloric restriction and retards aging parameters in mice.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE29572
Differential effects of krill oil and fish oil on the hepatic transcriptome in mice
  • organism-icon Mus musculus
  • sample-icon 21 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Dietary supplementation with -3 polyunsaturated fatty acids (-3 PUFAs), specifically the fatty acids docosahexaenoic acid (DHA; 22:6 -3) and eicosapentaenoic acid (EPA; 20:5 -3), is known to have beneficial health effects including improvements in glucose and lipid homeostasis and modulation of inflammation. To evaluate the efficacy of two different sources of -3 PUFAs, we performed gene expression profiling in the liver of mice fed diets supplemented with either fish oil or krill oil. We found that -3 PUFA supplements derived from a phospholipid krill fraction (krill oil) downregulated the activity of pathways involved in hepatic glucose production as well as lipid and cholesterol synthesis. The data also suggested that krill oil-supplementation increases the activity of the mitochondrial respiratory chain. Surprisingly, an equimolar dose of EPA and DHA derived from fish oil modulated fewer pathways than a krill oil-supplemented diet and did not modulate key metabolic pathways regulated by krill oil, including glucose metabolism, lipid metabolism and the mitochondrial respiratory chain. Moreover, fish oil upregulated the cholesterol synthesis pathway, which was the opposite effect of krill supplementation. Neither diet elicited changes in plasma levels of lipids, glucose or insulin, probably because the mice used in this study were young and were fed a low fat diet. Further studies of krill oil supplementation using animal models of metabolic disorders and/or diets with a higher level of fat may be required to observe these effects.

Publication Title

No associated publication

Sample Metadata Fields

Sex

View Samples
accession-icon E-MEXP-232
Platform comparison and transcription profiling of MDA-MB-231 human metastatic breast cancer cells, cultured for 48 h in the absence (control) or presence (treated) of 32 ?M resveratrol to evaluate Amersham CodeLink UniSet Human 10K I BioArray and Affymetrix GeneChip HG-U133A)
  • organism-icon Homo sapiens
  • sample-icon 3 Downloadable Samples
  • Technology Badge IconUNKNOWN

Description

Evaluation of two commercial microarray platforms (Amersham CodeLink UniSet Human 10K I BioArray and Affymetrix GeneChip HG-U133A). Both platforms have been tested on gene expression profiling of MDA-MB-231 human metastatic breast cancer cells, cultured for 48 h in the absence (control) or presence (treated) of 32 µM resveratrol.

Publication Title

Strategies for comparing gene expression profiles from different microarray platforms: application to a case-control experiment.

Sample Metadata Fields

Sex, Specimen part, Disease, Disease stage, Cell line, Compound

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accession-icon GSE109514
In vitro transcription studies used in a proof of concept whole transcriptome model predition study
  • organism-icon Homo sapiens
  • sample-icon 360 Downloadable Samples
  • Technology Badge Icon Affymetrix HT HG-U133+ PM Array Plate (hthgu133pluspm)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Cell line

View Samples
...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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