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accession-icon GSE14091
Identification of ANAC059 and ANAC092 early target genes
  • organism-icon Arabidopsis thaliana
  • sample-icon 13 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Identification of ANAC059 and ANAC092 early target genes using inducible overexpression system coupled with investigation of T-DNA insertion mutants

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE83291
Transcriptome analysis of flower of Arabidopsis accessions
  • organism-icon Arabidopsis thaliana
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

This work purposed on screening candidates of key genes invovled in the production of phenylacylated flavonol-glycosides

Publication Title

Characterization of a recently evolved flavonol-phenylacyltransferase gene provides signatures of natural light selection in Brassicaceae.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE37536
Genome wide identification of ORE1 early target genes
  • organism-icon Arabidopsis thaliana
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Global transcriptome patterns were performed using ORE1-IOE-2h (2h after Estradiol and Mock treatment) as well as transiently (6h) overexpressed Arabidopsis mesophyll cell protoplasts

Publication Title

NAC transcription factor ORE1 and senescence-induced BIFUNCTIONAL NUCLEASE1 (BFN1) constitute a regulatory cascade in Arabidopsis.

Sample Metadata Fields

Specimen part, Treatment

View Samples
accession-icon GSE54676
Transcription factor ATAF1 integrates carbon starvation responses with trehalose metabolism
  • organism-icon Arabidopsis thaliana
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Global transcriptome patterns were obtained from ATAF1-IOE seedlings at 1 h, 2 h and 5 h after estradiol induction or mock treatment, and from mature ATAF1-IOE leaves at 5 h after estradiol induction or mock treatment.

Publication Title

Transcription Factor Arabidopsis Activating Factor1 Integrates Carbon Starvation Responses with Trehalose Metabolism.

Sample Metadata Fields

Specimen part, Treatment, Time

View Samples
accession-icon GSE72949
Identification of HS memory-associated genes
  • organism-icon Arabidopsis thaliana
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

To identify genes associated with the heat stress (HS) memory, transcript profiling using Affymetrix ATH1 microarrays was performed to compare Col-0 seedlings after the priming stimulus with control plants (unprimed).

Publication Title

The plastid metalloprotease FtsH6 and small heat shock protein HSP21 jointly regulate thermomemory in Arabidopsis.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE42683
Expression analysis of genes affected by dehydration-responsive transcription factor Os02g31890 from rice.
  • organism-icon Oryza sativa
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Rice Genome Array (rice)

Description

Os02g31890 encodes a dehydration-responsive transcription factor (named ARID) from rice (Oryza sativa, cv. Dongjin).

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE53308
Whole genome transcript profiling upon 4 days of salt treatment
  • organism-icon Arabidopsis thaliana
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Our study identified long term salt stress treatment to induce symptoms similar to developmental senescence. In order to identify possible crosstalk components shared between developmental and salt-triggered senescence.

Publication Title

Salt stress and senescence: identification of cross-talk regulatory components.

Sample Metadata Fields

Age, Specimen part, Treatment

View Samples
accession-icon GSE98490
Identification of GRF9 early responding genes using an estradiol-inducible overexpression (XVE) system.
  • organism-icon Arabidopsis thaliana
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

The aim of the experiment was to identify genes rapidly responding at their expression level to enhanced expression of the transcription factor GRF9.

Publication Title

GROWTH-REGULATING FACTOR 9 negatively regulates arabidopsis leaf growth by controlling ORG3 and restricting cell proliferation in leaf primordia.

Sample Metadata Fields

Age, Specimen part

View Samples
accession-icon GSE22836
Identification of ORS1 target genes using inducible overexpression system
  • organism-icon Arabidopsis thaliana
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

The aim was to identify early target genes of the senescence-associated transcription factor: ORS1. For this purpose we used DEX-inducible system and studied the expression profile 5h after treatment using Affymetrix microarray.

Publication Title

ORS1, an H₂O₂-responsive NAC transcription factor, controls senescence in Arabidopsis thaliana.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE38721
Genome wide identification of SHYG early target genes
  • organism-icon Arabidopsis thaliana
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Global transcriptome patterns were performed using SHYG-IOE-5h (5h after Estradiol and Mock treatment)

Publication Title

NAC transcription factor speedy hyponastic growth regulates flooding-induced leaf movement in Arabidopsis.

Sample Metadata Fields

Specimen part, Treatment

View Samples

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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