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accession-icon GSE51380
Gene expression data from 16-month and 3-month old male rats, with three different levels of activity over the life span: sedentary, twice weekly physical activity, regular running wheel exercise.
  • organism-icon Rattus norvegicus
  • sample-icon 48 Downloadable Samples
  • Technology Badge Icon Affymetrix Rat Gene 1.0 ST Array (ragene10st)

Description

Gene expression data at rest and immediately post 30 min submaximal exercise in 3 month and 16 month old male rats, some of which were sedentary (SED), had access to a physical activity box twice weekly (PA) and some of which had daily access to a running wheel (EX).

Publication Title

No associated publication

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE5085
Expression data from female SD rats with access to lifelong exercise
  • organism-icon Rattus norvegicus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Rat Genome 230 2.0 Array (rat2302)

Description

Gene expression and phenotypic consequences of laboratory housing in rats.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age

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accession-icon GSE11303
Transcriptional responses of Escherichia coli k12 TPEN
  • organism-icon Escherichia coli
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix E. coli Genome 2.0 Array (ecoli2)

Description

DNA microarrays were conducted on E. coli K12 cells stressed with 10 M in N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (TPEN). Overall, 260 genes varied in expression, 114 up-regulated and 146 down-regulated by Zn deprivation

Publication Title

Characterization of Zn(II)-responsive ribosomal proteins YkgM and L31 in E. coli.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE58255
Genome-wide analysis of the Integrator complex
  • organism-icon Homo sapiens
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina HumanHT-12 V4.0 expression beadchip

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Integrator regulates transcriptional initiation and pause release following activation.

Sample Metadata Fields

Disease, Cell line, Treatment

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accession-icon GSE45715
Genome-wide analysis of BRCA1 and PALB2
  • organism-icon Homo sapiens
  • sample-icon 8 Downloadable Samples
  • Technology Badge IconIllumina HumanHT-12 V4.0 expression beadchip

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Genome-wide analysis reveals a role for BRCA1 and PALB2 in transcriptional co-activation.

Sample Metadata Fields

Specimen part, Disease, Cell line

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accession-icon GSE40892
Characteristics of Cross-Hybridization and Cross-Alignment in Pseudo-Xenograft samples by RNA-Seq and Microarrays
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 8 Downloadable Samples
  • Technology Badge IconIllumina HumanWG-6 v3.0 expression beadchip

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

No associated publication

Sample Metadata Fields

Cell line

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accession-icon GSE54833
Expression data in dSTING knockdown and control sibling flies after mock or pathogenic infection
  • organism-icon Drosophila melanogaster
  • sample-icon 40 Downloadable Samples
  • Technology Badge Icon Affymetrix Drosophila Genome 2.0 Array (drosophila2)

Description

Parental flies (y1v1;P{TRiP.JF01138}attP2 and y1w*;P{Act5C-GAL4}25FO1/CyO,y+) were mated and 4-7 day old flies were used for all subsequent experiments. dSTING RNAi flies expressed the dsRNA hairpin targeting dSTING and had straight wings, while sibling flies not expressing dSTING dsRNA had curly wings.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE54834
Expression data in dSTING knockdown S2 cells and whole flies after mock or pathogenic infection
  • organism-icon Drosophila melanogaster
  • sample-icon 38 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE43482
Cytosolic DNA stimulated gene regulation
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 32 Downloadable Samples
  • Technology Badge IconIllumina HumanHT-12 V4.0 expression beadchip, Illumina MouseWG-6 v2.0 expression beadchip

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

STING recognition of cytoplasmic DNA instigates cellular defense.

Sample Metadata Fields

Specimen part, Cell line

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accession-icon GSE14519
Expression data from multiple myeloma cells treated with arsenic
  • organism-icon Homo sapiens
  • sample-icon 27 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

We used microarrays to examine changes in gene expression in multiple myeloma cell lines following treatment with arsenic trioxide and darinaparsin

Publication Title

Darinaparsin induces a unique cellular response and is active in an arsenic trioxide-resistant myeloma cell line.

Sample Metadata Fields

No sample metadata fields

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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