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Mus musculus
6 Downloadable Samples
Illumina Genome Analyzer II
Description
Gene expression profiles of bitter TRCs and profiles of sweet and umami TRCs.
Publication Title
No associated publication
Sample Metadata Fields
Sex, Age, Specimen part, Cell line
View Samples
SRP161648- Mus musculus
- 24 Downloadable Samples
- Illumina HiSeq 2000
Description
NKTp, NKT1, NKT2, NKT17 were flow sorted from 7 wk old female live BALB/c TBET (gfp) KN2 reporter mice and RNA sequenced
Publication Title
No associated publication
Sample Metadata Fields
Sex, Specimen part
View Samples- Mus musculus, Homo sapiens
- 71 Downloadable Samples
Affymetrix Mouse Expression 430A Array (moe430a), Affymetrix Human Genome U133A Array (hgu133a)
Description
Compared differentially express genes by sex in mouse for the following tissues: hypothalamus, liver, kidney, ovaries and testis (3 biological x 2 technical replicates for each tissues/sex). We used Affymetrix MOE430A Genechip arrays.
Publication Title
Major molecular differences between mammalian sexes are involved in drug metabolism and renal function.
Sample Metadata Fields
Sex, Specimen part
View Samples- Mus musculus
- 2 Downloadable Samples
- Illumina HiSeq 2000
Description
mRNA sequencing of PyMT primary tumor cells with and without E-cadherin were isolated using FACS, based on expression of tumor cell-specific YFP expression, and sorted into an E-cadherin-positive and E-cadherin-negative population based on the expression of endogenous E-cadherin-mCFP.
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples- Homo sapiens
- 5 Downloadable Samples
- Affymetrix Human Gene 2.0 ST Array (hugene20st)
Description
In this study, we aimed to identify potential lncRNA deregulations associated with breast cancer malignancy instigated by MSCs-MCF7 co-culture. We profiled expression changes of lncRNAs in MCF-7 cells during EMT induced by coculture with hAD-MSCs, and found an intergenic lncRNA with proviouly unknown function (KB-1732A1.1, we termed it LincK), which was significantly elevated. Depletion of LincK decreased the growth, migration, invasion, and EMT in breast cancer cells, while overexpression of LincK exerted the opposite effects. Moreover, knockdown of LincK repressed tumorigenesis, and ectopic expression of LincK promoted tumor growth in MCF-7 xenograft model. LincKs can act as a sponge of mirR-200b, which inhibits its function in proliferation and metastasis. Thus we reported, for the rst time, the role of LincK in control of EMT and proliferation in breast cancer.
Publication Title
LincK contributes to breast tumorigenesis by promoting proliferation and epithelial-to-mesenchymal transition.
Sample Metadata Fields
Cell line
View Samples- Homo sapiens
- 7 Downloadable Samples
- IlluminaHiSeq2500
Description
HeLa cell culture RNASeq data was obtained to demonstrate the effectiveness of the Cas9 based DASH technique for depletion of unwanted abundant sequences.
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples- Mus musculus
- 4 Downloadable Samples
- Affymetrix Mouse Clariom S Array (clariomsmouse)
Description
Investigation of differentially expressed genes in circZbtb20 or Nr4a1 deficient ILC3s
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples- Mus musculus
- 2 Downloadable Samples
- Affymetrix Mouse Gene 2.0 ST Array (mogene20st)
Description
Investigation of differentially expressed genes in Ccp6-depleted D3 ESCs
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples- Mus musculus
- 2 Downloadable Samples
- Affymetrix Mouse Gene 2.0 ST Array (mogene20st)
Description
Investigation of differentially expressed genes in Ccp2-deficient CHILPs
Publication Title
IL-7Rα glutamylation and activation of transcription factor Sall3 promote group 3 ILC development.
Sample Metadata Fields
No sample metadata fields
View Samples- Mus musculus
- 2 Downloadable Samples
- Affymetrix Mouse Clariom S Array (clariomsmouse)
Description
Investigation of differentially expressed genes in circKcnt2-deficient ILC3s
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples