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accession-icon GSE103056
Ovaries of PNA mice and controls
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

To investigate the etiology of the hyperandrogenic phenotype of polycystic ovary syndrome (PCOS), a prenatally androgenized (PNA) mouse model was validated and used for microarray analysis.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part, Treatment

View Samples
accession-icon GSE41746
Comparative expression data of PD21 Pik3cd+/- and Pik3cd-/- female mice ovaries responsed to exogenous gonadotropins.
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

The Pik3cd null females are subfertile and have less growing follicles than their heterozygous littermates in the ovary. These mice poorly respond to the exogenous gonadotropins and ovulate much less oocytes than controls. In addition, the estrodial stimulated GC proliferation in preantral follicles is also impaired in Pik3cd null ovaries. FSH and E2 dramatically activates PI3K/AKT pathway in GCs of wild type mice, but not in the Pik3cd null mice.

Publication Title

Phosphoinositide 3-kinase p110δ mediates estrogen- and FSH-stimulated ovarian follicle growth.

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE71478
Expression data from E12.5 male fatal PGCs, PGCLC in vitro, round spermatids and spermatids like cells produced in vitro
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Generation of haploid gametes in vitro can potentially address gamete failure-based infertility.This study reports complete in vitro meiosis from murine ESC-derived PGCLCs resulting in the formation of male spermatid-like cells (SLCs) capable of producing viable fertile offspring via intracytoplasmic sperm injection (ICSI).Our findings provide the basis for generation of haploid spermatids in vitro in human, the generation of transgenic animals, and the use of this system to investigate mechanisms of meiosis.

Publication Title

Complete Meiosis from Embryonic Stem Cell-Derived Germ Cells In Vitro.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon E-MEXP-3441
Transcription profiling by array of Chemokines on Hepatic Stellate Cells of Schistosome-infected Mice and Antifibrotic Roles of CXCL9 and CXCL10 on Liver Non-parenchymal and LX-2 Cells
  • organism-icon Mus musculus
  • sample-icon 7 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430A 2.0 Array (mouse430a2)

Description

Compare the temporal gene expression of hepatic stellate cells in schistosoma japonica infected mice and Praziquantel treated mice.

Publication Title

Gene Profile of Chemokines on Hepatic Stellate Cells of Schistosome-infected Mice and Antifibrotic Roles of CXCL9 and CXCL10 on Liver Non-parenchymal and LX-2 Cells

Sample Metadata Fields

Sex, Age, Specimen part, Disease, Disease stage, Compound

View Samples
accession-icon GSE80255
Comparison of transcriptomes of mouse cumulus cells collected from mice before and after 6-h of hCG priming.
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

We sought to identify genes that are regulated by the ovulatory signals in mouse cumulus cells.

Publication Title

Oocyte-dependent activation of MTOR in cumulus cells controls the development and survival of cumulus-oocyte complexes.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE79862
Comparison of transcriptomes between DMSO-5uM and Torin1-5uM treated mouse cumulus-oocyte complexes cultured in vitro for 14h
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 2.1 ST Array (mogene21st)

Description

We sought to identify the potential specific roles of the MTOR signalling in cumulus cells by comparing the transcriptomes of the Control (treated with the DMSO vehicle) and MTOR-specific inhibitor Torin 1(5uM)-treated cumulus-oocyte complexes that were cultured for 16 hours.

Publication Title

Oocyte-dependent activation of MTOR in cumulus cells controls the development and survival of cumulus-oocyte complexes.

Sample Metadata Fields

Specimen part, Treatment

View Samples
accession-icon GSE22311
Expression data from pig mesenteric lymph nodes
  • organism-icon Sus scrofa
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon Affymetrix Porcine Genome Array (porcine)

Description

The mesenteric lymph nodes represent the immune response to eggs in schistosome infections,and the analysis of gene expression profiles of the mesenteric lymph nodes from the Vac-Cha (vaccinated with UV attenuated cercariae and challenged with normal cercariae)and Inf-Con (infected with normal cercariae) groups.

Publication Title

Immune events associated with high level protection against Schistosoma japonicum infection in pigs immunized with UV-attenuated cercariae.

Sample Metadata Fields

Sex, Specimen part, Treatment

View Samples
accession-icon GSE83106
Expression data from 9-day-old rat Sertoli cells and MBP-treated rat Sertoli cells
  • organism-icon Rattus norvegicus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Rat Gene 1.0 ST Array (ragene10st)

Description

Low-dose MBP can stimulated 9-day-old Sertoli cells proliferation and activated proliferation related signal pathway.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE52702
Interactive effects of arsenic and a high-fat diet on hepatic gene expression
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

Chronic exposure to inorganic arsenic (iAs) or a high-fat diet (HFD) can produce liver injury. However, the interactive molecular biological effects and mechanism of iAs and HFD are as of yet unclear.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE83105
Expression data from Sertoli cells treated with 0.1M NP, 0.1mM MBP, 0.1M NP+0.1mM MBP and solvent control
  • organism-icon Rattus norvegicus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Rat Gene 1.0 ST Array (ragene10st)

Description

The combined effects of NP and MBP were much more toxic than NP or MBP exposed alone.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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